BIOL 0001. General Biology
Units: 4
Prerequisite: Completion of CHEM 1A, CHEM 3A/3B, or higher level chemistry course with grade of "C" or better; AND completion of intermediate algebra or higher with grade of "C" or better or appropriate placement; AND eligibility for ENGL 11
Advisory: Eligibility for ENGL 1A
Hours: 108 (54 lecture, 54 laboratory)
Part of the BIOL 1/BIOL 140 and BIOL 1/BIOL 2/BIOL 3 course series for life science majors. Introduction to the principles of general biological concepts including the scientific method, biomolecules, cell structure and function with emphasis on cellular and molecular biology, genetics, and evolution. Lab focuses on key concepts of cell and molecular biology. Non-life science majors see BIOL 10 or BIOL 11. (C-ID BIOL 190) (CSU, UC)
BIOL 0001 - General Biology
http://catalog.sierracollege.edu/course-outlines/biol-0001/
Catalog Description DESCRIPTION IS HERE: Prerequisite: Completion of CHEM 1A, CHEM 3A/3B, or higher level chemistry course with grade of "C" or better; AND completion of intermediate algebra or higher with grade of "C" or better or appropriate placement; AND eligibility for ENGL 11 Advisory: Eligibility for ENGL 1A Hours: 108 (54 lecture, 54 laboratory) Description: Part of the BIOL 1/BIOL 140 and BIOL 1/BIOL 2/BIOL 3 course series for life science majors. Introduction to the principles of general biological concepts including the scientific method, biomolecules, cell structure and function with emphasis on cellular and molecular biology, genetics, and evolution. Lab focuses on key concepts of cell and molecular biology. Non-life science majors see BIOL 10 or BIOL 11. (C-ID BIOL 190) (CSU, UC) Units 4 Lecture-Discussion 54 Laboratory 54 By Arrangement Contact Hours 108 Outside of Class Hours Course Student Learning Outcomes Perform and design investigations using appropriate methods, instruments, and techniques, including the main steps of scientific inquiry. Explain the mechanisms of microevolution and describe the reproductive barriers that cause speciation. Describe the structure and function of DNA and explain the various patterns of gene inheritance. Describe the factors that regulate populations and impact biodiversity on earth. Describe the major cellular processes, including gene expression, mitosis and meiosis, cellular respiration, fermentation and photosynthesis. Course Content Outline I. Introduction and Molecular Biology (Lecture Objectives 1-3, 19; Lab Objectives 1-4) a. Characteristics of Life b. Taxonomic Classification of Living Things 1. history 2. hierarchy of classification 3. introduction to the 3 domains 4. systematics and phylogenetics: modern tools used in reconstructing phylogenies 5. origin of life c. Scientific Method 1. hypothetico-deductive reasoning and principle of falsifiability 2. observational and experimental tests 3. general rules of experimental design d. Organic Molecules 1. chemical characteristics of carbon 2. isomers 3. functional groups 4. macromolecules and polymers i. carbohydrates (functions in a living cell, monosaccharides, disaccharides, polysaccharides) ii. lipids (functions in a living cell, triglycerides, phospholipids, steroids) iii. proteins (functions in a living cell, amino acids and peptide bonds, levels of protein structure) iv. nucleic acids (functions in a living cell, nucleotides, DNA and RNA, ATP, ADP, NAD, FAD) II. Cell Structure and Function (Lecture Objectives 4-10; Lab Objectives 5-10) a. The Cell 1. history of discovery 2. cell theory 3. cell structure: prokaryotes and eukaryotes 4. components and function of the eukaryotic cell 5. plasma membrane structure and function i. passive transport (simple and facilitated diffusion, osmosis) ii. active transport (ion pumps, bulk transport) b. Energy Concepts 1. free energy and metabolism 2. laws of thermodynamics 3. ATP: structure and function 4. enzymes, their function, and regulation c. Photosynthesis 1. ecological importance of photosynthesis 2. leaf structure and the photosynthetic cell 3. the absorption spectrum 4. the light reactions i. photolysis ii. redox reactions iii. chemiosmosis iv. photophosphorylation v. linear electron flow vs. cyclic electron flow 5. Calvin cycle 6. alternative pathways of carbon fixation d. Aerobic Respiration 1. the aerobic cell i. glycolysis ii. transition reactions iii. Citric Acid Cycle iv. electron transport chain, chemiosmosis, and oxidative phosphorylation e. Anaerobic Respiration f. Fermentation 1. glycolysis 2. fermentation pathways g. Cell Communication 1. three stages of cell signaling h. Cell Cycles and Life Cycles 1. cell cycle in eukaryotes and prokaryotes 2. eukaryotic chromosomes and chromosome number 3. stages of mitosis 4. compare and contrast mitosis & meiosis 5. gamete production in animals, oogenesis vs. spermatogenesis III. Genetics (Lecture Objectives 11-17; Lab Objectives 11-16) a. Basic Principles of Heredity 1. introduction and history 2. monohybrid cross 3. terms 4. dihybrid cross 5. concept of dominance, incomplete dominance 6. multiple alleles and codominance 7. polygenic inheritance 8. pleiotropy 9. gene-gene interaction 10. environmental effects, phenotypic plasticity b. Human Genetics 1. sex determination in different animal groups 2. sex-linked genes 3. genetic disorders 4. pedigree analysis c. Chromosomal Basis of Inheritance 1. linked genes 2. chromosome mapping 3. X-inactivation 4. aneuploidy and polyploidy 5. genetic imprinting and extranuclear inheritance d. Molecular basis of inheritance 1. discovery of DNA structure 2. DNA structure 3. DNA replication 4. RNA structure, types of RNA 5. "Central Dogma" 6. point mutations e. gene regulation 1. gene regulation in prokaryotic cells (operons) 2. gene regulation in eukaryotic cells 3. epigenetics f. DNA Technology 1. recombinant DNA, use of vectors 2. main applications of DNA technology, GM organisms 3. restriction fragment analysis and gel electrophoresis, PCR 4. practical applications of biotechnology, DNA fingerprinting g. Genomics and developmental genetics 1. gene sequencing and genome mapping 2. gene expression during embryonic development 3. stem cells and cloning 4. homeotic genes IV. Evolution and Population Genetics (Lecture Objectives 18 & 19 review; Lab Objective 17) a. Darwin and the concept of natural selection 1. history of evolutionary thought 2. heritable variation and adaptation 3. artificial selection and natural selection 4. publication of "Origin of Species" 5. modes of natural selection b. Sexual selection c. Altruism and the concept of inclusive fitness d. "Conventional" evidence for evolution 1. paleontology 2. comparative anatomy/embryology 3. comparative biochemistry 4. DNA analysis e. "Modern Synthesis" and population genetics 1. importance of "population thinking" 2. gene pool and microevolution 3. Hardy-Weinberg Theorem f. Main factors in microevolution 1. genetic drift 2. gene flow 3. mutation 4. natural selection 5. non-random mating V. Ecology (Lecture Objective 20) a. Definitions b. Levels of Organization in Ecology 1. organism 2. population 3. community 4. ecosystem 5. biosphere c. Population Ecology 1. size and age structure 2. density 3. range 4. dispersal d. Community and Ecosystem Ecology 1. habitat and niche concept 2. interactions i. competition ii. mutualism iii. commensalism iv. parasitism/predation 3. food chains and food webs 4. succession e. Human Impacts and Sustainability Course Objectives Course Objectives Lecture Objectives: Student will successfully: 1. Explain the main characteristics of life and the major areas of study in modern Biology; 2. Identify the main steps of scientific inquiry; correctly apply hypothetico-deductive reasoning and the principle of falsifiability to biological systems; explain the difference between a scientific hypothesis and a scientific theory; 3. List the major classes of organic molecules essential to living cells; describe the major biological functions of each group and their basic chemical structure; distinguish between a macromolecule and a polymer; reproduce the structural formulas of basic mono- and polysaccharides, triglycerides, polypeptides, and polynucleotides; 4. Identify the major structural components (organelles) of a living cell (eukaryotic and prokaryotic); compare and contrast the structure and function of a prokaryotic and a eukaryotic cell, as well as that of a typical animal and plant cell; formulate the Cell Theory; 5. Describe the main membrane processes in a living cell; evaluate the fluid-mosaic model of the plasma membrane; distinguish between passive and active transport; distinguish between simple diffusion and facilitated diffusion; 6. State the First and the Second Laws of Thermodynamics; apply the knowledge of these laws to the living systems; analyze the concept of entropy and free energy as they relate to the living systems; evaluate the role of ATP and enzymes in metabolic reactions; 7. Describe the structure of a typical photosynthetic cell and outline the main stages of photosynthesis; analyze oxidation-reduction reactions taking place in photosynthetic cells; describe the role of pigments in photosystems; evaluate the outcome of light reactions and Calvin cycle during C3 photosynthesis; outline the alternative mechanisms of carbon fixation (C4, CAM), and evaluate their adaptive significance; 8. Evaluate the role of photosynthesis and respiration in the cycling of chemicals and flow of energy in ecosystems; describe the main stages of respiration reactions in a living cell; summarize the reactions of glycolysis, transition step, and citric acid cycle; diagram the processes of electron transport and oxidative phosphorylation in a mitochondrion; compare and contrast electron movement in a chloroplast and a mitochondrion; 9. Describe lactic acid and alcohol fermentation reactions; evaluate the adaptive significance of different fermentation pathways; 10. Evaluate the importance of cell signaling in single-celled and multicellular organisms; describe the three stages of cell signaling; give examples of the typical receptors and messenger molecules involved in cell signal reception, transduction, and response; 11. Describe the stages of a typical cell cycle in a eukaryotic and prokaryotic cell; discuss the structure of a eukaryotic chromosome; describe the stages of mitosis; 12. Evaluate different life cycles in eukaryotes; assess the adaptive significance of sexual reproduction; describe main stages of oogenesis and spermatogenesis in animals; discuss the significance of genetic recombination during meiosis; 13. Outline the main principles of Mendelian genetics; analyze the concept of dominance as it relates to modern understanding of heredity; solve simple genetic problems using different approaches, such as Punnett square and probabilities; discuss exceptions to Mendelian rules (incomplete dominance, pleiotropy, co-dominance, multiple alleles, linkage, gene-gene interaction, phenotypic plasticity); evaluate patterns of inheritance of main human genetic disorders using pedigree analysis; 14. Analyze the chromosomal basis of inheritance; outline chromosomal mutations/abnormalities in humans and other animals; relate the concept of linked genes and genetic recombination to construction of chromosome maps; 15. Discuss events leading to discovery of three-dimensional structure of DNA; analyze the relationship between DNA structure and its function in a living cell; outline the main steps and the enzymes involved in DNA replication using prokaryotic model; discuss different types of RNA and their role in regulation of gene expression; 16. State the "Central Dogma" of Molecular Biology; list stages of gene expression in a eukaryotic and a prokaryotic cell; evaluate the properties of genetic code; assess potential consequences of different types of point mutations on resulting proteins; 17. Analyze the logistic and ethical issues of modern recombinant DNA technology; describe the steps used in creating recombinant DNA with bacterial vectors; explain how techniques such as gel electrophoresis and PCR are used in biotechnology; 18. Discuss the history of evolutionary thought in 18th-20th centuries; compare and contrast contributions of James Hutton, Charles Lyell, J.-B. Lamarck, George Cuvier, Charles Darwin, Alfred Wallace, and others on the development of the theory of biological evolution; analyze main agents of microevolution (mutation, nonrandom mating, migration, genetic drift, selection); compare and contrast different forms of selection (natural selection, artificial selection, kin selection, group selection, sexual selection); outline main events in evolutionary history of Earth; explain how paleontology, comparative anatomy, and comparative biochemistry and DNA analysis provide evidence for biological evolution; apply Hardy-Weinberg theorem to estimate allele frequencies in a population; 19. Analyze the difference between traditional taxonomy and phylogeny; outline the main tools used in recreating phylogenetic trees; describe the main taxonomic categories used in modern systematics; describe and evaluate Miller's hypotheses of origin of life; 20. Outline the general scopes of study in modern ecology; describe current impact of human activities and population growth on natural ecosystems and the future of Earth; and 21. Communicate scientific information in an oral, written, or visual form; understand the relationship between the scientific process and the primary literature; learn to assess and distinguish among qualitative levels of scientific literature; learn to research a narrow topic of interest in the field of biology using both primary and secondary sources of information; learn to use CSE format for citations; and complete writing assignments involving the evaluation of scientific literature. Laboratory Objectives Student will successfully: 1. Use the main steps of scientific inquiry to design scientific experiments using living organisms or laboratory conditions that simulate biological systems; 2. Demonstrate the proper use of a compound light microscope; locate the optical and mechanical parts of the compound microscope and discuss the function of each part; calculate the total magnification and diameter of the field of view for all four objective lenses and use the information to estimate the size of an object; 3. List the major classes of organic molecules essential to living cells; describe the main functional groups of such molecules; distinguish between a macromolecule and a polymer; reproduce the structural formulas of basic mono- and polysaccharides, triglycerides, polypeptides, and polynucleotides; use chemistry models to build various functional groups and monomers; 4. Interpret the results of chemical tests for presence of polypeptides, lipids, sugars, and polysaccharides in unknown solutions; 5. Observe and identify the major structural components of living cells using a compound light microscope and laboratory models of cells. Compare and contrast the structures observed in bacteria cells, plant cells and animal cells using the compound light microscope and laboratory models of cells; 6. Determine the effect of tonicity on plant and animal cells; investigate the relationship between molecular size, molecular concentration, and distance on the rate of diffusion; 7. Evaluate the role of ATP and enzymes in metabolic reactions; experimentally assess various factors such as enzyme concentration, temperature and pH influencing progress of enzymatic reactions; 8. Describe the structure of a typical photosynthetic cell and outline the main stages of photosynthesis; measure the diffusion of pant pigments on chromatography paper; demonstrate how a spectrophotometer works; measure the effect of light and chloroplast function on the rate of photosynthesis and provide a graphical interpretation of the data; 9. Evaluate the role of photosynthesis and respiration in the cycling of chemicals and flow of energy in ecosystems; describe the main stages of respiration reactions in a living cell; investigate the effect of organism activity on rate of respiration; 10. Describe lactic acid and alcohol fermentation reactions; investigate factors influencing the rate of fermentation reactions; 11. Describe the stages of a typical cell cycle in a eukaryotic and prokaryotic cell; discuss the structure of a eukaryotic chromosome; identify the stages of mitosis in both plant cells and animal cells; 12. Describe main stages of oogenesis and spermatogenesis in animals; discuss the significance of genetic recombination during meiosis; observe microscope slides of ovaries and testes; 13. Solve simple genetic problems using different approaches, such as Punnett square and probabilities; evaluate patterns of inheritance of main human genetic disorders using pedigree analysis; collect and analyze genetics data, comparing observed to expected phenotypic ratios; 14. Outline the main steps and the enzymes involved in DNA replication using prokaryotic model; 15. State the "Central Dogma" of Molecular Biology; list stages of protein synthesis in a eukaryotic and a prokaryotic cell; use genetic code to "translate" a sample DNA sequence into a polypeptide sequence using puzzles or models; 16. Describe the steps used in creating recombinant DNA with bacterial vectors; explain how techniques such as gel electrophoresis and PCR are used in biotechnology; in a laboratory setting, isolate DNA from human tissue cells, apply PCR and gel electrophoresis techniques to assess the presence of specified non-coding genetic markers; 17. Analyze main agents of microevolution (mutation, nonrandom mating, migration, genetic drift, selection); outline main events in evolutionary history of Earth; explain how paleontology, comparative anatomy, and comparative biochemistry provide evidence for biological evolution; apply Hardy-Weinberg theorem to estimate allele frequencies in a population; 18. Choose and apply appropriate methods, instruments, and techniques in biological investigations; use metric system measurements in all laboratory exercises; apply simple statistical analyses (such as chi-square and t-test) when interpreting the results of a lab experiment; use scientific instruments (such as light compound microscope, spectrophotometer, micropipette), equipment and supplies safely and properly; contribute to team activities during lab exercises; and 19. Work in collaboration with other students to explain scientific information in oral, written, or visual form; present laboratory reports using scientific format; collect, record and report scientific information in an organized manner. Methods of Evaluation Classroom Discussions Essay Examinations Objective Examinations Problem Solving Examinations Projects Reports Skill Demonstrations Reading Assignments 1. Read the chapters on Molecular Genetics in the textbook and answer specific questions at each level of Bloom's taxonomy (understand, apply, analyze, evaluate). 2. Read a research paper (review article) on genome editing using CRISPR-Cas9 and answer specific questions about what CRISPR-Cas 9 is and how it can be used to create genetically modified organisms. Use the Internet or library databases to search for a scientific/scholarly article about an application or product using genome editing with CRISPR-Cas9. Explain the application or product and how it is being used by scientists or the general public. Cite the article in Council of Science Editors (CSE) format. Writing, Problem Solving or Performance 1. Genetics problems (10 problems). Example problem: One gene for coat color in cats is sex-linked (X chromosome). The dominant allele produces a yellow coat color, the recessive allele produces a black coat color and the heterozygous condition produces tortoise shell color. Give the sex and coat colors for all possible offspring from the mating of a black male with a tortoise shell female. Show your work. 2. Transcription and translation exercises and problems (5 problems). Example problems: a. Using a given sequence of amino acids in a polypeptide, write the possible sequences of nucleotides in the gene (DNA) for that polypeptide. b. Using a given sequence of nucleotides in DNA, determine the consequences of a specified mutation in terms of transcription and translation of the gene. Also explain how the final polypeptide might be affected. Other (Term projects, research papers, portfolios, etc.) Complete several 1-2 page writing assignments such as the evaluation of content in primary scientific literature, a comparison of information available from the primary and secondary literature, or the preparation of an annotated bibliography (in CSE format) for a particular topic; or research and write a 5-7 page review paper (in CSE format) on a biological topic; or research and prepare a poster on a biological topic, including references in CSE format. Sample assignments: Topic: Scientific Method and Scientific Process Read material on specific websites provided by the instructor (ex. UC Berkeley website called “Understanding Science, how science really works” and perform the following objectives: compare and contrast the steps of the scientific method described in lecture or the textbook to the scientific process practiced by most scientists; describe the peer evaluation process for publishing a scientific article in a peer-reviewed journal; explain how scientists study physical phenomena thar are beyond human senses or time frame (ex. phenomena that cannot be seen directly or occurred before humans evolved on earth). Student responses for these objectives are submitted online. Topic: Ecology or another topic covered in lecture Analyze a scientific article on this topic provided by the instructor and perform the following objectives: identify the major sections of the scientific article and describe the type of information found within each section; compare and contrast the writing style of the scientific article and a magazine article written for general public; identify the citation format used in the scientific article; answer instructor’s questions about the authors’ overall goals, experiments, and findings. Student responses for these objectives are submitted online. Topic: Enzymes (function and regulation) Collaborate with 2-3 other students in the lab group to write a laboratory report in scientific format summarizing the amylase experiment performed during the Enzyme Lab. Template for the report is provided online and the report is submitted as a group online. Methods of Instruction Laboratory Lecture/Discussion Distance Learning Other materials and-or supplies required of students that contribute to the cost of the course.
Biological Sciences
http://catalog.sierracollege.edu/departments/biological-sciences/
The Biological Sciences Department offers course work in Anatomy, Biology, Botany, Microbiology, Physiology and Zoology.
ALH 0001 - Electronic Health Record/Billing
http://catalog.sierracollege.edu/course-outlines/alh-0001/
Catalog Description DESCRIPTION IS HERE: Prerequisite: Completion of BIOL 55, BUS 250, HED 2, and HSCI 3 with grades of "C" or better Hours: 63 (36 lecture, 27 laboratory) Description: How to document the total patient encounter in the Electronic Health Record using a current vendor product along with Medisoft Clinical Practice Management which incorporates the electronic billing process. (letter grade only) (not transferable) Units 2.5 Lecture-Discussion 36 Laboratory 27 By Arrangement Contact Hours 63 Outside of Class Hours Course Student Learning Outcomes Apply HIPAA standards while working with patient data in the Electronic Health Record/Practice Management System. Identify the 10 steps involved in Medical Documentation and Billing for the patient encounter. Apply Meaningful Use measures while working within the Electronic Health Record. Course Content Outline I. Major Government HIT Initiatives II. Documenting the Patient Encounter III. Functions of the Electronic Health Record Program IV. Functions of the Practice Management Program V. The Medical Documentation and Billing Cycle a. Step 1: Preregister Patients b. Step 2: Establish Financial Responsibility for Visit c. Step 3: Check In Patients d. Step 4: Review Coding Compliance e. Step 5: Review Billing Compliance f. Step 6: Check Out Patients g. Step 7: Prepare and Transmit Claims h. Step 8: Monitor Payer Adjudication I. Step 9: Generate Patient Statements j. Step 10: Follow Up Payments and Collections VI. HIPAA, HITECH and Medical Records Course Objectives Course Objectives Lecture Objectives: 1. Define HIPAA standards while working with patient data in the Electronic Health Record/Practice Management System. 2. Identify the 10 steps involved in Medical Documentation and Billing for the patient encounter. 3. Classify functions of the Electronic Health Record/Practice Management System. 4. Explain and discuss Meaningful Use measures while working within the Electronic Health Record. Lab Objectives: 1. Apply HIPAA standards as they relate to patient data with the Electronic Health Record/ Practice Management System. 2. Demonstrate (within Medisoft Clinical) the ability to perform each of the 10 steps involved in Medical Documentation and Billing for the patient encounter. 3. Identify functions of the Electronic Health Record vs.the Practice Management System. Methods of Evaluation Objective Examinations Skill Demonstrations Reading Assignments 1. Read section on checking in patients in the textbooks and be prepared for a classroom discussion. 2. Read section on claim generation in the textbook and be prepared to discuss how to generate claims. Writing, Problem Solving or Performance Using online publisher tool, log into chapter exercises for checking in patients and "watch it, try it apply it" and submit exercises. Answer critical thinking chapter summary questions for checking in patients and submit. Other (Term projects, research papers, portfolios, etc.) Research and complete worksheet on "Meaningful Use". Complete worksheet on Electronic Health Record terminology for all covered chapters. Methods of Instruction Laboratory Lecture/Discussion Distance Learning Other materials and-or supplies required of students that contribute to the cost of the course.
Course Identification Numbering System (C-ID)
...0032A BIOL 110B BIOL 0005 BIOL 120B BIOL 0006 BIOL 135S BIOL 0001 , BIOL 0002...
Transferable Courses to the UC System
...BIOL 0056 / BIOL 0056L if taken after BIOL 0001 ) 4 BIOL 0005, BIOL 0006, BIOL...
